Uses of Class
org.episteme.natural.biology.BioChemicalReaction

Packages that use BioChemicalReaction

Package	Description
org.episteme.natural.biology
org.episteme.natural.biology.loaders.biopax	BioPAX loader for biological pathways and networks.
org.episteme.natural.biology.loaders.sbml	Systems Biology Markup Language (SBML) loader for Episteme.

Uses of BioChemicalReaction in org.episteme.natural.biology

Methods in org.episteme.natural.biology that return types with arguments of type BioChemicalReaction

Modifier and Type	Method	Description
List<BioChemicalReaction>	Pathway.getReactions()

Methods in org.episteme.natural.biology with parameters of type BioChemicalReaction

Modifier and Type	Method	Description
void	Pathway.addReaction(BioChemicalReaction reaction)

Uses of BioChemicalReaction in org.episteme.natural.biology.loaders.biopax

Methods in org.episteme.natural.biology.loaders.biopax that return BioChemicalReaction

Modifier and Type	Method	Description
BioChemicalReaction	BioPAXBridge.convertReaction(BioPAXBiochemicalReaction biopaxReaction)	Converts BioPAX biochemical reaction to Episteme BioChemicalReaction.

Uses of BioChemicalReaction in org.episteme.natural.biology.loaders.sbml

Methods in org.episteme.natural.biology.loaders.sbml that return BioChemicalReaction

Modifier and Type	Method	Description
BioChemicalReaction	SBMLBridge.convertToReaction(SBMLReaction sbmlReaction, Map<String,Molecule> moleculeMap)	Converts a single SBML reaction to a Episteme BioChemicalReaction.

Methods in org.episteme.natural.biology.loaders.sbml that return types with arguments of type BioChemicalReaction

Modifier and Type	Method	Description
List<BioChemicalReaction>	SBMLBridge.toReactions(SBMLModel model)	Converts SBML reactions to Episteme BioChemicalReaction objects.