Uses of Class
org.episteme.natural.biology.evolution.Clade

Packages that use Clade

Package	Description
org.episteme.natural.biology.evolution
org.episteme.natural.biology.loaders.phyloxml	PhyloXML loader for phylogenetic tree data.

Uses of Clade in org.episteme.natural.biology.evolution

Methods in org.episteme.natural.biology.evolution that return Clade

Modifier and Type	Method	Description
static Clade	PhylogeneticTree.buildUPGMA(Real[][] distanceMatrix, List<Species> speciesList)
Clade	PhylogeneticTree.getRoot()

Methods in org.episteme.natural.biology.evolution that return types with arguments of type Clade

Modifier and Type	Method	Description
List<Clade>	Clade.getChildren()

Methods in org.episteme.natural.biology.evolution with parameters of type Clade

Modifier and Type	Method	Description
void	Clade.addChild(Clade child)
void	PhylogeneticTree.setRoot(Clade root)

Uses of Clade in org.episteme.natural.biology.loaders.phyloxml

Methods in org.episteme.natural.biology.loaders.phyloxml that return Clade

Modifier and Type	Method	Description
Clade	PhyloXMLBridge.convertClade(PhyloXMLClade dto)	Recursively converts PhyloXML clade DTO to core Episteme Clade.