Uses of Class
org.episteme.natural.biology.genetics.SequenceAlignment.AlignmentResult

Packages that use SequenceAlignment.AlignmentResult

Package	Description
org.episteme.natural.biology.genetics	Biological modeling, genetics, and life science simulations.

Uses of SequenceAlignment.AlignmentResult in org.episteme.natural.biology.genetics

Methods in org.episteme.natural.biology.genetics that return SequenceAlignment.AlignmentResult

Modifier and Type	Method	Description
static SequenceAlignment.AlignmentResult	SequenceAlignment.alignGlobal(String s1, String s2, int match, int mismatch, int gap)	Needleman-Wunsch algorithm for global alignment.
static SequenceAlignment.AlignmentResult	SequenceAlignment.alignLocal(String s1, String s2, int match, int mismatch, int gap)	Smith-Waterman algorithm for local alignment.