Uses of Class
org.episteme.natural.biology.loaders.biopax.BioPAXModel

Packages that use BioPAXModel

Package	Description
org.episteme.natural.biology.loaders.biopax	BioPAX loader for biological pathways and networks.

Uses of BioPAXModel in org.episteme.natural.biology.loaders.biopax

Subclasses with type arguments of type BioPAXModel in org.episteme.natural.biology.loaders.biopax

Modifier and Type	Class	Description
class	BioPAXReader	BioPAX Reader for biological pathways and networks.

Methods in org.episteme.natural.biology.loaders.biopax that return BioPAXModel

Modifier and Type	Method	Description
protected BioPAXModel	BioPAXReader.loadFromInputStream(InputStream is, String id)
protected BioPAXModel	BioPAXReader.loadFromSource(String resourceId)
BioPAXModel	BioPAXReader.read(File file)
BioPAXModel	BioPAXReader.read(InputStream input)

Methods in org.episteme.natural.biology.loaders.biopax that return types with arguments of type BioPAXModel

Modifier and Type	Method	Description
Class<BioPAXModel>	BioPAXReader.getResourceType()

Methods in org.episteme.natural.biology.loaders.biopax with parameters of type BioPAXModel

Modifier and Type	Method	Description
List<Pathway>	BioPAXBridge.toPathways(BioPAXModel model)	Extracts all pathways from a BioPAX model.