Uses of Class
org.episteme.natural.chemistry.loaders.cml.CMLException

Packages that use CMLException

Package	Description
org.episteme.natural.chemistry.loaders.cml	Provides the org.episteme.natural.chemistry.loaders.cml module.
org.episteme.natural.chemistry.loaders.cml.cmlimpl	Provides the org.episteme.natural.chemistry.loaders.cml.cmlimpl module.

Uses of CMLException in org.episteme.natural.chemistry.loaders.cml

Methods in org.episteme.natural.chemistry.loaders.cml that throw CMLException

Modifier and Type	Method	Description
void	AbstractBase.characters(SaxHandler saxHandler, String content)	SAX2 parsing routine called from characters() callback NOT namespace aware
void	BaseTool.characters(SaxHandler saxHandler, String content)	SAX2 parsing routine - called from characters() callback
AbstractBase	AbstractCMLDocument.clone(AbstractBase element)	clone element in context of document.
void	AbstractBase.endElement(SaxHandler saxHandler)	SAX2 parsing routine called from endElement() callback NOT namespace aware
void	BaseTool.endElement(SaxHandler saxHandler)	SAX2 parsing routine - called from endElement() callback
Element	AbstractBase.getOrCreateChild(String elemName)	get a child of a given name If it doesn't exist, create and add it
void	BaseTool.mustEqual(BaseTool baseTool)	throws exception if the contained object is not equal to the other contained object.
AbstractCMLDocument	CMLDocumentFactory.parseSAX(InputSource is)	Parses an XML document into the DOM, creating a new owner document (debug is false).
AbstractCMLDocument	CMLDocumentFactory.parseSAX(InputSource is, boolean debug)	Parses an XML document into the DOM, creating a new owner document.
Element	CMLDocumentFactory.parseSAX(InputSource is, AbstractCMLDocument doc)	parses XML document into existing DOM The new document must be well-formed with a single root element the application will probably wish to relocate this in the DOM. debug is set to false
Element	CMLDocumentFactory.parseSAX(InputSource is, AbstractCMLDocument doc, boolean debug)	parses XML document into existing DOM The new document must be well-formewd with a single root element the application will probably wish to relocate this in the DOM.
AbstractCMLDocument	CMLDocumentFactory.parseString(String xmlString)	convenience method; parses a string representing a well-formed XML document
void	BaseTool.processCurrentCommand(Workflow workflow)	run workflow script or object.
AbstractCMLDocument	CMLReader.read(File file)	Reads a CML document from a file.
AbstractCMLDocument	CMLReader.read(InputStream input)	Reads a CML document from an input stream.
AbstractCMLDocument	CMLReader.read(URL url)	Reads a CML document from a URL.
AbstractCMLDocument	CMLReader.readFromString(String cml)	Reads a CML document from a string.
void	AbstractBase.removeTextChildren()	removes whitespace nodes or throws any Exception for non-whitespace ones
void	Workflow.run()	Runs the workflow.
void	CMLNode.setVersion(String v)	set CML version
void	AbstractBase.startElement(SaxHandler saxHandler, Attributes attributes)	SAX2 parsing routine called from startElement() callback NOT namespace aware
void	BaseTool.startElement(SaxHandler saxHandler, Attributes attributes)	SAX2 parsing routine - called from startElement() callback
void	AbstractBase.writeXML(Writer w)	write XML use current control (version and syntax)
void	BaseTool.writeXML(Writer w, String control)	write XML, using class-specific information
void	CMLNode.writeXML(Writer w)	write XML (uses default control)
void	CMLNode.writeXML(Writer w, String control)	write XML (allows for syntactic variants)

Uses of CMLException in org.episteme.natural.chemistry.loaders.cml.cmlimpl

Methods in org.episteme.natural.chemistry.loaders.cml.cmlimpl that throw CMLException

Modifier and Type	Method	Description
void	CMLBaseImpl.addChild(Element elem)	content model
Node	CMLBaseImpl.appendChild(Element elem)	traps the addition of an child to the element content By default this will be routed to addChild() and org.w3c.dom.Node.appendChild(), but other element-specific stuff can be interposed (within the Cont
void	BaseToolImpl.characters(SaxHandler saxHandler, String content)	SAX2 parsing routine - called from characters() callback
void	CMLBaseImpl.characters(SaxHandler saxHandler, String content)	SAX2 parsing routine called from characters() callback NOT namespace aware
AbstractBase	AbstractCMLDocumentImpl.clone(AbstractBase element)	clone element in context of document.
void	CMLBaseImpl.deleteChild(Element elem)	delete an element The element must have been previously created and present in the DOM
void	BaseToolImpl.endElement(SaxHandler saxHandler)	SAX2 parsing routine - called from endElement() callback
void	CMLBaseImpl.endElement(SaxHandler saxHandler)	SAX2 parsing routine called from endElement() callback NOT namespace aware
Element	CMLBaseImpl.getOrCreateChild(String elemName)	get a child of a given name If it doesn't exist, create and add it
void	BaseToolImpl.mustEqual(BaseTool otherTool)	throws exception if the contained object is not equal to the other contained object.
void	BaseToolImpl.mustEqualAttributes(BaseTool otherTool)
void	BaseToolImpl.mustEqualChildNodes(BaseTool otherTool)
static void	CMLBaseImpl.outputChildren(Element elem, Writer w, String control)
AbstractCMLDocument	DocumentFactoryImpl.parseSAX(InputSource is)	Parses an XML document via SAX (whitespace is ignored).
AbstractCMLDocument	DocumentFactoryImpl.parseSAX(InputSource is, boolean debug)	Parses an XML document via SAX with optional debugging (whitespace is ignored).
Element	DocumentFactoryImpl.parseSAX(InputSource is, AbstractCMLDocument doc)	Parses an XML document via SAX into an existing DOM (whitespace is ignored).
Element	DocumentFactoryImpl.parseSAX(InputSource is, AbstractCMLDocument doc, boolean debug)	Description of the Method whitespace is ignored
AbstractCMLDocument	DocumentFactoryImpl.parseString(String xmlString)	Convenience method to parse an XML string into a CMLDocument.
void	BaseToolImpl.processCurrentCommand(Workflow workflow)	run workflow script or object.
void	CMLBaseImpl.removeTextChildren()	removes whitespace nodes or throws any Exception for non-whitespace ones
void	AbstractCMLDocumentImpl.setVersion(String v)	set CML version
void	CMLBaseImpl.setVersion(String v)	set CML version
void	BaseToolImpl.startElement(SaxHandler saxHandler, Attributes attributes)	SAX2 parsing routine - called from startElement() callback
void	CMLBaseImpl.startElement(SaxHandler saxHandler, Attributes attributes)	SAX2 parsing routine called from startElement() callback NOT namespace aware
void	AbstractCMLDocumentImpl.writeXML(Writer w)	write XML use current control (version and syntax)
void	AbstractCMLDocumentImpl.writeXML(Writer w, String control)	write the document in XML, using node-specific routines
void	BaseToolImpl.writeXML(Writer w, String control)	write XML, using class-specific information
void	CMLBaseImpl.writeXML(Writer w)	write XML use current control (version and syntax)
void	CMLBaseImpl.writeXML(Writer w, String control)	write XML (allows for syntactic variants)
static void	CMLBaseImpl.writeXML0(Element elem, Writer w, String control)