Class Individual

java.lang.Object

org.episteme.natural.biology.SocialEntity

org.episteme.natural.biology.Individual

All Implemented Interfaces:

Serializable, Commented, ComprehensiveIdentification, Identified<Identification>, Named, Positioned<Place>, SimulationAgent

Direct Known Subclasses:

Human

public class Individual
extends SocialEntity
implements Positioned<Place>

Represents an individual organism - a single instance of a species.

See Also:

• Serialized Form

Field Summary

Fields inherited from class SocialEntity

engine, id, influence, prestige, traits

Constructor Summary

Constructors

Constructor	Description
Individual(String id, Species species, BiologicalSex sex)
Individual(String id, Species species, BiologicalSex sex, LocalDate birthDate)	Helper constructor for String IDs.
Individual(Identification id, Species species, BiologicalSex sex)
Individual(Identification id, Species species, BiologicalSex sex, LocalDate birthDate, EventDrivenEngine engine)	Creates a new individual organism with an associated simulation engine.

Method Summary

Modifier and Type	Method	Description
void	addAvailableBehavior(Behavior behavior)
void	addChild(Individual child)
void	addParent(Individual parent)
void	addPathology(String pathologyName)
void	addRole(Object role)
Real	calculateInbreedingCoefficient()
Real	calculateRelationshipCoefficient(Individual other)
List<Individual>	calculateSuccessionOrder(boolean malePriority)
Individual	clone(String newId)
void	die(LocalDate date)
boolean	equals(Object o)
int	getAge()
Set<Individual>	getAncestors()
Set<Behavior>	getAvailableBehaviors()
String	getBiographySummary()
LocalDate	getBirthDate()
Set<Individual>	getChildren()
LocalDate	getDeathDate()
Set<Individual>	getDescendants()
int	getGenealogicalDistance(Individual other)
LifeStage	getLifeStage()
Set<Individual>	getParents()
Set<String>	getPathologies()
Place	getPosition()	Returns the position of this entity.
ReproductionMode	getReproductionMode()
BiologicalSex	getSex()
List<Individual>	getSiblings()
Species	getSpecies()
Place	getTerritory()
int	hashCode()
boolean	isAlive()
boolean	isAncestorOf(Individual suspectedDescendant)
boolean	isDescendantOf(Individual suspectedAncestor)
boolean	isSiblingOf(Individual other)
void	processEvent(Event event)	Process an event delivered to this agent.
void	removeAvailableBehavior(Behavior behavior)
void	setBiographySummary(String summary)
void	setDeathDate(LocalDate deathDate)
void	setLifeStage(LifeStage stage)
void	setPosition(Place place)
void	setReproductionMode(ReproductionMode mode)
void	setTerritory(Place territory)
String	toString()

Methods inherited from class SocialEntity

getEngine, getId, getInfluence, getPrestige, getSimId, getTraits, interact, setEngine, setInfluence, setPrestige

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface Commented

getComments, getTrait, setComments

Methods inherited from interface ComprehensiveIdentification

getName, getTrait, setName, setTrait

Constructor Details

Individual

public Individual(Identification id,
 Species species,
 BiologicalSex sex,
 LocalDate birthDate,
 EventDrivenEngine engine)

Creates a new individual organism with an associated simulation engine.

Individual

public Individual(String id,
 Species species,
 BiologicalSex sex,
 LocalDate birthDate)

Helper constructor for String IDs.

Individual

public Individual(Identification id,
 Species species,
 BiologicalSex sex)

Individual

public Individual(String id,
 Species species,
 BiologicalSex sex)

Method Details

getDescendants

public Set<Individual> getDescendants()

getAncestors

public Set<Individual> getAncestors()

isDescendantOf

public boolean isDescendantOf(Individual suspectedAncestor)

isAncestorOf

public boolean isAncestorOf(Individual suspectedDescendant)

getGenealogicalDistance

public int getGenealogicalDistance(Individual other)

getSpecies

public Species getSpecies()

getSex

public BiologicalSex getSex()

getBirthDate

public LocalDate getBirthDate()

getDeathDate

public LocalDate getDeathDate()

setDeathDate

public void setDeathDate(LocalDate deathDate)

getLifeStage

public LifeStage getLifeStage()

setLifeStage

public void setLifeStage(LifeStage stage)

getReproductionMode

public ReproductionMode getReproductionMode()

setReproductionMode

public void setReproductionMode(ReproductionMode mode)

getPosition

public Place getPosition()

Description copied from interface: Positioned

Returns the position of this entity.

Specified by:

getPosition in interface Positioned<Place>

Returns:

the position.

setPosition

public void setPosition(Place place)

getTerritory

public Place getTerritory()

setTerritory

public void setTerritory(Place territory)

addRole

public void addRole(Object role)

getParents

public Set<Individual> getParents()

addParent

public void addParent(Individual parent)

getChildren

public Set<Individual> getChildren()

addChild

public void addChild(Individual child)

addPathology

public void addPathology(String pathologyName)

getPathologies

public Set<String> getPathologies()

getBiographySummary

public String getBiographySummary()

setBiographySummary

public void setBiographySummary(String summary)

addAvailableBehavior

public void addAvailableBehavior(Behavior behavior)

getAvailableBehaviors

public Set<Behavior> getAvailableBehaviors()

removeAvailableBehavior

public void removeAvailableBehavior(Behavior behavior)

isAlive

public boolean isAlive()

getAge

public int getAge()

die

public void die(LocalDate date)

isSiblingOf

public boolean isSiblingOf(Individual other)

getSiblings

public List<Individual> getSiblings()

clone

public Individual clone(String newId)

calculateInbreedingCoefficient

public Real calculateInbreedingCoefficient()

calculateRelationshipCoefficient

public Real calculateRelationshipCoefficient(Individual other)

calculateSuccessionOrder

public List<Individual> calculateSuccessionOrder(boolean malePriority)

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object

processEvent

public void processEvent(Event event)

Description copied from interface: SimulationAgent

Process an event delivered to this agent.

Specified by:

processEvent in interface SimulationAgent

Specified by:

processEvent in class SocialEntity

Parameters:

event - The event to process