Interface GenomeProvider

All Superinterfaces:

AlgorithmProvider

All Known Implementing Classes:

StandardGenomeProvider

public interface GenomeProvider
extends AlgorithmProvider

Provider for genomic analysis algorithms.

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static final record	GenomeProvider.Target

Method Summary

Modifier and Type	Method	Description
List<GenomeProvider.Target>	scanCrispr(String sequence, String pamMotif, int spacerLength)	Scans for CRISPR targets.

Methods inherited from interface AlgorithmProvider

description, getAlgorithmType, getMetadata, getName, getPriority, isAvailable, score, shutdown

Method Details

scanCrispr

List<GenomeProvider.Target> scanCrispr(String sequence,
 String pamMotif,
 int spacerLength)

Scans for CRISPR targets.