Class PDBParser

java.lang.Object

org.episteme.natural.biology.loaders.PDBParser

public class PDBParser
extends Object

PDB (Protein Data Bank) file parser. Builds a Protein structure from ATOM records.

Since:

1.0

Author:

Silvere Martin-Michiellot, Gemini AI (Google DeepMind)

Constructor Summary

Constructors

Constructor	Description
PDBParser()

Method Summary

Modifier and Type	Method	Description
static Protein	parse(String pdbContent, String pdbId)	Parses PDB content into a Protein object.

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

PDBParser

public PDBParser()

Method Details

parse

public static Protein parse(String pdbContent,
 String pdbId)
                     throws IOException

Parses PDB content into a Protein object.

Parameters:

pdbContent - String content of the PDB file

pdbId - Identifier for the protein (optional)

Returns:

Protein model

Throws:

IOException - If reading fails