Package org.episteme.natural.biology.loaders.neuroml

package org.episteme.natural.biology.loaders.neuroml

NeuroML loader for computational neuroscience models.

Parses NeuroML v2 files containing neuron morphology, biophysics, and networks.

See Also:

• NeuroML.org

Related Packages

Package	Description
org.episteme.natural.biology.loaders
org.episteme.natural.biology.loaders.biopax	BioPAX loader for biological pathways and networks.
org.episteme.natural.biology.loaders.itis	Biological taxonomy, genetics, and physiological modeling.
org.episteme.natural.biology.loaders.pdbml	PDBML loader for Protein Data Bank macromolecular structures.
org.episteme.natural.biology.loaders.phyloxml	PhyloXML loader for phylogenetic tree data.
org.episteme.natural.biology.loaders.sbml	Systems Biology Markup Language (SBML) loader for Episteme.

Class	Description
BiophysicalProperties	Biophysical (electrophysiological) properties.
Cell	Represents a neuron cell in NeuroML.
ChannelDensity	Density of ion channels on membrane.
IonChannel	Ion channel model.
Morphology	Cell morphology with segments.
Network	Neural network with populations and projections.
NeuroMLBridge	Bridge for converting NeuroML DTOs to core Episteme domain objects.
NeuroMLDocument	NeuroML document container.
NeuroMLException	Exception for NeuroML parsing errors.
NeuroMLReader	NeuroML Reader for computational neuroscience models.
Point3D	3D point with diameter for morphology.
Population	Population of neurons of the same cell type.
Projection	Synaptic projection between populations.
Segment	A segment (compartment) of a neuron.
SegmentGroup	Group of segments (e.g., soma, axon, dendrite).
Synapse	Synapse model (exponential decay).