PDBMLBridge (Episteme API Documentation)

java.lang.Object

org.episteme.natural.biology.loaders.pdbml.PDBMLBridge

public class PDBMLBridge extends Object

Bridge for converting PDBML DTOs to core Episteme structural biology objects.

Since:: 1.0
Author:: Silvere Martin-Michiellot, Gemini AI (Google DeepMind)

Constructor Summary

Constructors

Constructor

Description

PDBMLBridge()
Method Summary

Modifier and Type

Method

Description

Protein

toProtein(PDBMLStructure pdbModel)

Converts PDBML structure to Episteme Protein.

Methods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- PDBMLBridge
  
  public PDBMLBridge()
Method Details
- toProtein
  
  public Protein toProtein(PDBMLStructure pdbModel)
  
  Converts PDBML structure to Episteme Protein.
  
  Parameters:
  
  pdbModel - the parsed PDBML model
  
  Returns:
  
  a Protein object with full structural data