Uses of Class
org.episteme.natural.biology.loaders.pdbml.AtomSite

Packages that use AtomSite

Package	Description
org.episteme.natural.biology.loaders.pdbml	PDBML loader for Protein Data Bank macromolecular structures.

Uses of AtomSite in org.episteme.natural.biology.loaders.pdbml

Methods in org.episteme.natural.biology.loaders.pdbml that return types with arguments of type AtomSite

Modifier and Type	Method	Description
List<AtomSite>	PDBMLStructure.getAtoms()
List<AtomSite>	PDBMLStructure.getAtomsForChain(String chainId)	Get atoms for a specific chain.
List<AtomSite>	PDBMLStructure.getBackboneAtoms()	Get only CA (alpha carbon) atoms for backbone analysis.

Methods in org.episteme.natural.biology.loaders.pdbml with parameters of type AtomSite

Modifier and Type	Method	Description
void	PDBMLStructure.addAtom(AtomSite atom)
double	AtomSite.distanceTo(AtomSite other)	Calculate distance to another atom in Angstroms.