Class AtomSite

java.lang.Object
org.episteme.natural.biology.loaders.pdbml.AtomSite
public class AtomSite extends Object
Atomic coordinate record.
Since:
1.0
Author:
Silvere Martin-Michiellot, Gemini AI (Google DeepMind)

  • Constructor Details

    • AtomSite

      public AtomSite()

  • Method Details

    • getId

      public int getId()

    • setId

      public void setId(int id)

    • getAtomSymbol

      public String getAtomSymbol()

    • setAtomSymbol

      public void setAtomSymbol(String s)

    • getAtomName

      public String getAtomName()

    • setAtomName

      public void setAtomName(String n)

    • getResidueName

      public String getResidueName()

    • setResidueName

      public void setResidueName(String n)

    • getChainId

      public String getChainId()

    • setChainId

      public void setChainId(String id)

    • getResidueSeq

      public int getResidueSeq()

    • setResidueSeq

      public void setResidueSeq(int seq)

    • getX

      public double getX()

    • setX

      public void setX(double x)

    • getY

      public double getY()

    • setY

      public void setY(double y)

    • getZ

      public double getZ()

    • setZ

      public void setZ(double z)

    • getOccupancy

      public double getOccupancy()

    • setOccupancy

      public void setOccupancy(double o)

    • getTempFactor

      public double getTempFactor()

    • setTempFactor

      public void setTempFactor(double t)

    • distanceTo

      public double distanceTo(AtomSite other)
      Calculate distance to another atom in Angstroms.

    • isBackbone

      public boolean isBackbone()
      Check if this is a backbone atom.

    • toString

      public String toString()
      Overrides:
      toString in class Object