Uses of Class
org.episteme.natural.biology.loaders.sbml.SBMLSpecies

Packages that use SBMLSpecies

Package	Description
org.episteme.natural.biology.loaders.sbml	Systems Biology Markup Language (SBML) loader for Episteme.

Uses of SBMLSpecies in org.episteme.natural.biology.loaders.sbml

Methods in org.episteme.natural.biology.loaders.sbml that return SBMLSpecies

Modifier and Type	Method	Description
SBMLSpecies	SBMLModel.getSpeciesById(String id)

Methods in org.episteme.natural.biology.loaders.sbml that return types with arguments of type SBMLSpecies

Modifier and Type	Method	Description
List<SBMLSpecies>	SBMLModel.getBoundaryMetabolites()	Returns the list of boundary metabolites.
List<SBMLSpecies>	SBMLModel.getInternalMetabolites()	Returns the list of internal metabolites (non-boundary species).
List<SBMLSpecies>	SBMLModel.getSpecies()

Methods in org.episteme.natural.biology.loaders.sbml with parameters of type SBMLSpecies

Modifier and Type	Method	Description
void	SBMLModel.addSpecies(SBMLSpecies sp)
Molecule	SBMLBridge.convertToMolecule(SBMLSpecies sbmlSpecies)	Converts a single SBML species to a Episteme Molecule.