Class SBMLSpecies

java.lang.Object
org.episteme.natural.biology.loaders.sbml.SBMLSpecies
public class SBMLSpecies extends Object
Represents a species (metabolite) in an SBML model.
Since:
1.0
Author:
Silvere Martin-Michiellot, Gemini AI (Google DeepMind)

  • Constructor Details

    • SBMLSpecies

      public SBMLSpecies()

  • Method Details

    • getFormula

      public String getFormula()

    • setFormula

      public void setFormula(String formula)

    • getCharge

      public Integer getCharge()

    • setCharge

      public void setCharge(Integer charge)

    • getId

      public String getId()

    • setId

      public void setId(String id)

    • getName

      public String getName()

    • setName

      public void setName(String name)

    • getCompartmentId

      public String getCompartmentId()

    • setCompartmentId

      public void setCompartmentId(String compartmentId)

    • getInitialConcentration

      public Real getInitialConcentration()

    • setInitialConcentration

      public void setInitialConcentration(Real initialConcentration)

    • getInitialAmount

      public Real getInitialAmount()

    • setInitialAmount

      public void setInitialAmount(Real initialAmount)

    • isBoundaryCondition

      public boolean isBoundaryCondition()

    • setBoundaryCondition

      public void setBoundaryCondition(boolean boundaryCondition)

    • isConstant

      public boolean isConstant()

    • setConstant

      public void setConstant(boolean constant)

    • isHasOnlySubstanceUnits

      public boolean isHasOnlySubstanceUnits()

    • setHasOnlySubstanceUnits

      public void setHasOnlySubstanceUnits(boolean hasOnlySubstanceUnits)

    • getDisplayName

      public String getDisplayName()
      Returns the display name (name if set, otherwise id).

    • toString

      public String toString()
      Overrides:
      toString in class Object