ProteinFoldingProvider (Episteme API Documentation)

All Superinterfaces:: AlgorithmProvider

All Known Implementing Classes:: StandardProteinFoldingProvider

public interface ProteinFoldingProvider extends AlgorithmProvider

Provider for protein folding using the HP model.

Method Summary

Modifier and Type

Method

Description

Real

calculateEnergy(int[][] positions, boolean[] isHydrophobic)

Calculates energy for a fold.

double

calculateEnergyDouble(int[][] positions, boolean[] isHydrophobic)

float

calculateEnergyFloat(int[][] positions, boolean[] isHydrophobic)

void

simulate(int[][] positions, boolean[] isHydrophobic, int iterations, double temperature, long seed)

Performs Monte-Carlo steps.

Methods inherited from interface AlgorithmProvider
description, getAlgorithmType, getMetadata, getName, getPriority, isAvailable, score, shutdown

Method Details
- calculateEnergy
  
  Real calculateEnergy(int[][] positions, boolean[] isHydrophobic)
  
  Calculates energy for a fold.
- calculateEnergyDouble
  
  double calculateEnergyDouble(int[][] positions, boolean[] isHydrophobic)
- calculateEnergyFloat
  
  float calculateEnergyFloat(int[][] positions, boolean[] isHydrophobic)
- simulate
  
  void simulate(int[][] positions, boolean[] isHydrophobic, int iterations, double temperature, long seed)
  
  Performs Monte-Carlo steps.