Uses of Package
org.episteme.natural.chemistry

Packages that use org.episteme.natural.chemistry

Package	Description
org.episteme.natural.biology
org.episteme.natural.biology.loaders.biopax	BioPAX loader for biological pathways and networks.
org.episteme.natural.biology.loaders.sbml	Systems Biology Markup Language (SBML) loader for Episteme.
org.episteme.natural.chemistry
org.episteme.natural.chemistry.biochemistry
org.episteme.natural.chemistry.computational
org.episteme.natural.chemistry.computational.quantum
org.episteme.natural.chemistry.electrochemistry
org.episteme.natural.chemistry.elements
org.episteme.natural.chemistry.kinetics
org.episteme.natural.chemistry.loaders
org.episteme.natural.chemistry.loaders.cml	Provides the org.episteme.natural.chemistry.loaders.cml module.
org.episteme.natural.chemistry.polymer
org.episteme.natural.chemistry.thermodynamics
org.episteme.natural.physics.loaders.thermoml	ThermoML loader for IUPAC/NIST thermodynamic property data.
org.episteme.natural.ui.viewers.chemistry
org.episteme.natural.ui.viewers.chemistry.backends

Classes in org.episteme.natural.chemistry used by org.episteme.natural.biology

Class	Description
Atom	An atom in a molecular structure.
ChemicalReaction	Chemical reaction with equation balancing and stoichiometry.
Element	A chemical element.
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.biology.loaders.biopax

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.biology.loaders.sbml

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry

Class	Description
Atom	An atom in a molecular structure.
Bond	A chemical bond between two atoms.
BondType	Represents the type of a chemical bond.
ChemicalReaction	Chemical reaction with equation balancing and stoichiometry.
ChemicalReactionParser.Formula	Represents a parsed chemical formula.
ChemicalReactionParser.Reaction	Represents a parsed chemical reaction.
ChemistryConstants.MatterState	States of matter.
ChemistryConstants.PhaseTransition	Phase transitions.
Element	A chemical element.
ElementCategory	Categorization of chemical elements (e.g.
Isotope	Represents an isotope of a chemical element.
MolecularGraph	Represents a molecule as a graph of atoms and bonds.
MolecularGraph.Bond
MolecularGraph.BondType
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.biochemistry

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.computational

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.computational.quantum

Class	Description
Atom	An atom in a molecular structure.
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.electrochemistry

Class	Description
ChemicalReaction	Chemical reaction with equation balancing and stoichiometry.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.elements

Class	Description
Element	A chemical element.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.kinetics

Class	Description
ChemicalReaction	Chemical reaction with equation balancing and stoichiometry.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.loaders

Class	Description
Compound	Represents a chemical compound with its primary identification and properties.
Element	A chemical element.
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.loaders.cml

Class	Description
Atom	An atom in a molecular structure.
Bond	A chemical bond between two atoms.
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.polymer

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.chemistry.thermodynamics

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.physics.loaders.thermoml

Class	Description
Molecule	A molecule: collection of atoms connected by bonds.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.ui.viewers.chemistry

Class	Description
Atom	An atom in a molecular structure.
Bond	A chemical bond between two atoms.

Classes in org.episteme.natural.chemistry used by org.episteme.natural.ui.viewers.chemistry.backends

Class	Description
Atom	An atom in a molecular structure.
Bond	A chemical bond between two atoms.